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Chromosome9 primers

by | Sep 18, 2018 | Primers | 0 comments

Seq ID Count Primer type Orientation Len tm GC% Any compl 3′ compl Seq Prod size Pair any compl Pair 3′ compl Motif Motif Len SSR SSRLen
CM001034.1 1 SSR FORWARD 20 55.1 40 8 2 GTTCGATCGACATCTTTCAT 238 4 3 TG 2 TGTGTGTGTGTG 12
CM001034.1 1 SSR REVERSE 20 55.2 40 6 2 TTGACATGTGCCAGTTCTAA
CM001034.1 1 SSR FORWARD 20 55.12 45 2 0 GTGTTGGTTGGTAAGGAGAA 250 4 0 CT 2 CTCTCTCTCTCT 12
CM001034.1 1 SSR REVERSE 20 55.34 40 5 3 ATATGAAAACCTGGTGGTGA
CM001034.1 1 SSR FORWARD 20 55.16 40 4 1 AGGAGCTTGTGAAAAAGTGA 267 3 1 AT 2 ATATATATATATATATATATATAT 24
CM001034.1 1 SSR REVERSE 20 56.73 45 4 0 CCTGATCCCTAAACCAAAGA
CM001034.1 1 SSR FORWARD 19 55.08 47.37 7 2 TCACGTGGTACGTGCTTAT 252 6 3 TA 2 TATATATATATA 12
CM001034.1 1 SSR REVERSE 20 55.6 45 4 2 TGTCGTACTCACAATCAACG
CM001034.1 1 SSR FORWARD 20 55.16 50 6 1 GAAGGTACGTATTCGCAGAG 254 4 0 CT 2 CTCTCTCTCTCTCTCTCTCTCTCTCT 26
CM001034.1 1 SSR REVERSE 19 55.19 42.11 4 2 CCGAGTTTGAAGACCAAAT
CM001034.1 1 SSR FORWARD 22 55.03 40.91 4 2 GTGGTTCTTGTATATGTGTCCA 247 3 0 AT 2 ATATATATATAT 12
CM001034.1 1 SSR REVERSE 20 55.1 45 3 2 TAGCCTCTCGGGTGTAATAA
CM001034.1 1 SSR FORWARD 21 55.26 42.86 4 1 GTGGGCGAGTTATAGTCTTTT 262 4 3 TA 2 TATATATATATA 12
CM001034.1 1 SSR REVERSE 19 55.22 47.37 4 2 GCACGGGTCAAAATCTAGT
CM001034.1 1 SSR FORWARD 20 55.45 50 3 2 TTACCAGTTGAGACCTGAGC 251 3 0 TC 2 TCTCTCTCTCTCTC 14
CM001034.1 1 SSR REVERSE 20 55.37 45 4 2 GTTGATGATGTCGAGAATCC
CM001034.1 1 SSR FORWARD 20 56.39 50 3 0 GTAGTTTTACAGGGGCGTTC 237 4 0 CA 2 CACACACACACACACA 16
CM001034.1 1 SSR REVERSE 20 55.46 40 4 2 GGAAAATGCGAGAGTCATTA
CM001034.1 1 SSR FORWARD 20 55.35 50 4 1 GGTGGACAACATGAGAAGAC 244 4 2 TC 2 TCTCTCTCTCTCTCTC 16
CM001034.1 1 SSR REVERSE 20 55.36 50 6 3 TCAGGAGCAACTGATAGTCC
CM001034.1 1 SSR FORWARD 19 55.02 42.11 2 0 CAGGCAAAAGAAGCATACA 249 4 0 AT 2 ATATATATATATATATAT 18
CM001034.1 1 SSR REVERSE 20 55.11 40 6 0 TCCTGCAGATACATGAACAA
CM001034.1 1 SSR FORWARD 20 55.87 45 6 2 ATACTTACCTGCATGGAGCA 247 4 1 AT 2 ATATATATATAT 12
CM001034.1 1 SSR REVERSE 20 55.32 40 6 2 GTTGAGCAAAGTTTTGAAGC
CM001034.1 1 SSR FORWARD 20 55.99 45 4 3 GCGGAACCCCTAGTTTATTA 246 4 0 TA 2 TATATATATATATATATATATA 22
CM001034.1 1 SSR REVERSE 20 55.08 50 6 0 GCATGCATAGGTTAGAGAGG
CM001034.1 1 SSR FORWARD 20 55.15 45 4 3 TGATCCTTTCTTGAGGTGAC 240 5 1 GA 2 GAGAGAGAGAGA 12
CM001034.1 1 SSR REVERSE 20 55.57 40 6 0 AATGCATCAGCGTTTAGTTC
CM001034.1 1 SSR FORWARD 20 55.03 50 3 3 CGCATCATACAGTCTCACAC 250 2 0 GA 2 GAGAGAGAGAGAGA 14
CM001034.1 1 SSR REVERSE 20 55.46 45 3 0 CCTTTTCTTCCAAACCCTAC
CM001034.1 1 SSR FORWARD 21 55.04 42.86 4 2 TCCAGCAATTACCACTACCTA 262 4 1 CT 2 CTCTCTCTCTCTCT 14
CM001034.1 1 SSR REVERSE 20 55.12 40 5 1 GATTTGCATGTGTCATGTGT
CM001034.1 1 SSR FORWARD 20 55.18 40 7 3 CAAAACCGAAACTTTCAGAG 268 6 3 GA 2 GAGAGAGAGAGAGA 14
CM001034.1 1 SSR REVERSE 20 55.29 40 4 2 TGCCAAACTCTAAAGCTGAT
CM001034.1 1 SSR FORWARD 20 57.58 40 4 0 GAAATTGGGCTTTGTGTTGT 277 4 0 AT 2 ATATATATATATAT 14
CM001034.1 1 SSR REVERSE 20 55.67 40 4 1 TTGGAAACATGGATAGCAGT
CM001034.1 1 SSR FORWARD 20 55.65 45 3 2 TCCCTATGAACACTGAGGAA 241 3 1 TG 2 TGTGTGTGTGTGTG 14
CM001034.1 1 SSR REVERSE 20 56.79 40 4 2 CGTTTAGCGCGTTTACAATA
CM001034.1 1 SSR FORWARD 19 57.5 42.11 5 0 AAGCCCAATTTCAAACACC 200 3 0 AT 2 ATATATATATATATATATATATAT 24
CM001034.1 1 SSR REVERSE 20 55.94 40 4 2 AACGTCCATCCCTAATCAAT
CM001034.1 1 SSR FORWARD 20 55.11 50 4 2 GAGATGAGTTGCGTTCTAGG 235 4 0 TA 2 TATATATATATATATA 16
CM001034.1 1 SSR REVERSE 20 55.45 40 3 2 CACTGGCAAAGAGAAAATGT
CM001034.1 1 SSR FORWARD 20 55.04 40 4 2 TCTGTGGCTATTTTCTCGAT 252 5 2 TA 2 TATATATATATA 12
CM001034.1 1 SSR REVERSE 20 55.47 40 4 2 CAAAATGAGATTGGCCTAGA
CM001034.1 1 SSR FORWARD 20 55.44 40 6 0 ACAATTGCGTCAACTCTTTC 239 4 0 AT 2 ATATATATATATATATAT 18
CM001034.1 1 SSR REVERSE 21 55.14 42.86 4 0 TGTGCGCTAGTCTTTAGTTTC
CM001034.1 1 SSR FORWARD 20 55.11 40 6 2 TACTTTCATGACCAGCATCA 267 4 1 TA 2 TATATATATATA 12
CM001034.1 1 SSR REVERSE 20 55.07 40 3 0 TTGCTCTCTCAAACATTCCT
CM001034.1 1 SSR FORWARD 20 55.11 40 6 2 TACTTTCATGACCAGCATCA 267 4 1 TA 2 TATATATATATA 12
CM001034.1 1 SSR REVERSE 20 55.07 40 3 0 TTGCTCTCTCAAACATTCCT
CM001034.1 1 SSR FORWARD 20 55.45 45 3 0 GTTCCACTTTCACAAACACC 246 4 0 CT 2 CTCTCTCTCTCT 12
CM001034.1 1 SSR REVERSE 20 55.93 45 2 1 ACATCAAACCAGAACACGAC
CM001034.1 1 SSR FORWARD 21 55.85 42.86 2 0 ACACAGACAAATCACACAACC 238 5 2 TA 2 TATATATATATA 12
CM001034.1 1 SSR REVERSE 20 55.14 50 4 0 GAAGTGAGCTTGTTGGAGAG
CM001034.1 1 SSR FORWARD 19 55.03 52.63 5 1 AGCCTATTCCTGGACACAC 257 6 0 AC 2 ACACACACACACACACACAC 20
CM001034.1 1 SSR REVERSE 20 55.2 40 3 1 CTACCCAAATCGGAATACAA
CM001034.1 1 SSR FORWARD 19 55.03 52.63 5 1 AGCCTATTCCTGGACACAC 257 6 0 TA 2 TATATATATATATA 14
CM001034.1 1 SSR REVERSE 20 55.2 40 3 1 CTACCCAAATCGGAATACAA
CM001034.1 1 SSR FORWARD 20 55.33 45 3 3 GATAAGGAGCATCACGGTAA 247 3 1 CA 2 CACACACACACA 12
CM001034.1 1 SSR REVERSE 20 55.22 45 3 0 CAAAGTGGGTATTGGAGAGA
CM001034.1 1 SSR FORWARD 20 55.15 45 3 0 TCTGGGTTGAGAAGAATCAC 242 3 2 CT 2 CTCTCTCTCTCTCT 14
CM001034.1 1 SSR REVERSE 20 55.06 50 5 2 TCCGTTGTAGTCTAGCTGGT
CM001034.1 1 SSR FORWARD 20 55.19 50 4 2 GGAGTCAAAAGCTACACGAG 244 3 0 GA 2 GAGAGAGAGAGAGAGA 16
CM001034.1 1 SSR REVERSE 20 55.17 40 8 1 GGGAAAACAGATCTGAAACA
CM001034.1 1 SSR FORWARD 20 55.19 50 4 2 GGAGTCAAAAGCTACACGAG 244 3 0 GA 2 GAGAGAGAGAGAGAGA 16
CM001034.1 1 SSR REVERSE 20 55.17 40 8 1 GGGAAAACAGATCTGAAACA
CM001034.1 1 SSR FORWARD 20 55.32 40 6 2 GCATCATTATTGCAAGTCCT 250 6 2 AT 2 ATATATATATAT 12
CM001034.1 1 SSR REVERSE 20 55.32 40 6 2 GCATCATTATTGCAAGTCCT
CM001034.1 1 SSR FORWARD 20 55.59 40 4 0 GATGATTAAGGCATTTGGTG 238 5 2 AG 2 AGAGAGAGAGAGAG 14
CM001034.1 1 SSR REVERSE 20 55.2 50 2 0 CCACCATACACTACCCATTC
CM001034.1 1 SSR FORWARD 20 55.04 45 4 1 CAGAAAACGAGAACGTAACC 257 6 2 AG 2 AGAGAGAGAGAGAG 14
CM001034.1 1 SSR REVERSE 20 55.09 45 4 0 ACACTTGTCTCCATCGTTTC
CM001034.1 1 SSR FORWARD 19 55.84 42.11 6 2 GGTTTTGACGGATCCAATA 244 4 1 TA 2 TATATATATATATATA 16
CM001034.1 1 SSR REVERSE 20 56.43 45 6 2 TGGAACGTTTCTCTCAAGTG
CM001034.1 1 SSR FORWARD 20 55.39 45 6 3 GTAAAAACTCACGTGCCAGT 251 4 2 CT 2 CTCTCTCTCTCT 12
CM001034.1 1 SSR REVERSE 20 55.37 45 3 2 GGTTTAGTCTTGGCTGATGA
CM001034.1 1 SSR FORWARD 20 55.3 40 4 1 CCTTTAATGCAGTTTGCTTC 257 4 1 AG 2 AGAGAGAGAGAGAG 14
CM001034.1 1 SSR REVERSE 20 55.09 50 4 2 CTCGCCTTACCAGAGATATG
CM001034.1 1 SSR FORWARD 20 55.47 40 5 0 TCTTAACGGTTTTGACTTGG 252 5 2 TC 2 TCTCTCTCTCTC 12
CM001034.1 1 SSR REVERSE 20 55.09 40 4 2 ATTAGCCAGCCATTAACTGA
CM001034.1 1 SSR FORWARD 20 55.22 40 4 1 GATGAGCATTGGGAAGATAA 252 4 0 TG 2 TGTGTGTGTGTG 12
CM001034.1 1 SSR REVERSE 20 55.42 40 5 1 TTCGGTCTCAGAAACAAAAC
CM001034.1 1 SSR FORWARD 20 55.67 55 6 2 CTGGCTCGAGTGGTAGAGTA 255 3 1 TA 2 TATATATATATATA 14
CM001034.1 1 SSR REVERSE 20 55.01 40 4 0 ATGGTACACAAAACCCAAAG
CM001034.1 1 SSR FORWARD 20 55.73 45 4 2 GGTGACTAGACGGGAAAAAT 300 4 2 AT 2 ATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 56
CM001034.1 1 SSR REVERSE 20 56.51 40 4 0 CTCGCTTCCAATAAAATTCC
CM001034.1 1 SSR FORWARD 20 55.19 45 4 0 TTACGGTCTCTGCACTTCTT 254 3 0 TC 2 TCTCTCTCTCTCTCTCTC 18
CM001034.1 1 SSR REVERSE 20 55.29 45 3 0 TATCTCTTGAACCAGCCATC
CM001034.1 1 SSR FORWARD 20 55.11 40 6 2 AAGAAGGAGGAAAATTCCAG 226 4 3 AG 2 AGAGAGAGAGAG 12
CM001034.1 1 SSR REVERSE 20 55.18 45 7 1 GAAGATCAGATGTTGCTGGT
CM001034.1 1 SSR FORWARD 20 55.17 40 2 0 TTCCAAACCATCTTCACTTC 258 5 3 AT 2 ATATATATATATATAT 16
CM001034.1 1 SSR REVERSE 20 55.04 50 6 0 AGAGCTGCAGAGTGAGAAAG
CM001034.1 1 SSR FORWARD 20 55.73 45 4 2 GGTGACTAGACGGGAAAAAT 300 4 2 AT 2 ATATATATATATATATATATATATATATATATATATATATATATATATATATATAT 56
CM001034.1 1 SSR REVERSE 20 56.51 40 4 0 CTCGCTTCCAATAAAATTCC
CM001034.1 1 SSR FORWARD 20 55.19 45 4 0 TTACGGTCTCTGCACTTCTT 254 3 0 TC 2 TCTCTCTCTCTCTCTCTC 18
CM001034.1 1 SSR REVERSE 20 55.29 45 3 0 TATCTCTTGAACCAGCCATC
CM001034.1 1 SSR FORWARD 20 55.11 40 6 2 AAGAAGGAGGAAAATTCCAG 226 4 3 AG 2 AGAGAGAGAGAG 12
CM001034.1 1 SSR REVERSE 20 55.18 45 7 1 GAAGATCAGATGTTGCTGGT
CM001034.1 1 SSR FORWARD 20 55.17 40 2 0 TTCCAAACCATCTTCACTTC 258 5 3 AT 2 ATATATATATATATAT 16
CM001034.1 1 SSR REVERSE 20 55.04 50 6 0 AGAGCTGCAGAGTGAGAAAG
CM001034.1 1 SSR FORWARD 20 55.3 45 3 3 TTCTCTTACACGGCTTAGGA 236 3 0 AT 2 ATATATATATATATATATATATATATATATATATAT 36
CM001034.1 1 SSR REVERSE 20 55.49 45 2 0 GGCTATCAACCAAATCACAC

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